It seems that you are running the tests in a directory to which you do not have write access. Is that correct?

Cheers

Nigel

---
Nigel W. Moriarty
Building 33R0349, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709     Email : NWMoriarty@LBL.gov
Fax   : 510-486-5909       Web  : CCI.LBL.gov


On Wed, Aug 28, 2019 at 3:06 AM Almudena Ponce Salvatierra <maps.farma@gmail.com> wrote:
Dear all,

yesterday I spent quite some time trying to install Rosetta, so that I can use all it's modules within Phenix. 

However, when I am running the tests, rosetta stops and I get the following message (see below).

Any help would be much appreciated.

Thank you

Almudena

======================= ROSETTA/PHENIX X-ray refinement =======================


Traceback (most recent call last):

  File "/Applications/phenix-1.14-3260/build/../modules/phenix/phenix/command_line/rosetta_refine.py", line 307, in <module>

    run(sys.argv[1:], create_dir=True)

  File "/Applications/phenix-1.14-3260/build/../modules/phenix/phenix/command_line/rosetta_refine.py", line 159, in run

    default_directory_number=params.output.directory_number)

  File "/Applications/phenix-1.14-3260/modules/cctbx_project/libtbx/utils.py", line 1925, in create_run_directory

    os.makedirs(dir_name)

  File "/Applications/phenix-1.14-3260/base/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/../../../../../../../Python.framework/Versions/2.7/lib/python2.7/os.py", line 157, in makedirs

    mkdir(name, mode)

OSError: [Errno 13] Permission denied: 'rosetta_1'

Almudenas-MacBook-Pro:bin almudenaponce$ 

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