The error says it doesn't like the TER cards. Remove them all and retry.
Cheers
Nigel
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Nigel W. Moriarty
Building 64R0246B, Physical Biosciences Division
Lawrence Berkeley National Laboratory
Berkeley, CA 94720-8235
Phone : 510-486-5709 Email : [email protected]
Fax : 510-486-5909 Web : CCI.LBL.gov
On Thu, May 28, 2015 at 1:29 PM, jp d
Hi, I am having trouble getting phenix to used segid's in reference model restraints when my reference and target pdbs both don't use chain ID's. phenix quits with this message:
*** Adding Reference Model Restraints *** Sorry: chain ' ' in /home/path/removed/agnref2.pdb contains one or more errant TER cards. Please remove and try again.
my definition file looks like this: refinement { main { reference_model_restraints = True } reference_model { file = two.pdb } }
refinement.reference_model.reference_group { reference = segid A16S selection = segid A16S } (above about 50 more times)
this was on versions 1.9-1692 , dev-2016 and dev-2056
any suggestions ? thanks jpd
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