Hi Maia,

here is "copy-paste" from this web page (http://www.phenix-online.org/download/):

"CCI Apps (...) the subset of Phenix components developed by the Computational Crystallography Initiative (CCI) at LBNL. Command-line tools only (e.g. phenix.refine, phenix.hyss, phenix.elbow, phenix.xtriage). The Phenix GUI is not included."

So, CCI Apps is a piece (or part) of PHENIX.

If you don't have any problems with phenix.refine or/and phenix.ready_set in your current version of PHENIX then just keep using it until the next newer version of PHENIX is available.

If you discovered any bugs in phenix.refine or/and phenix.ready_set, then chances are that these problems are gone in the latest CCI Apps.

Please let me know if you have any questions.

Pavel.


On 2/19/2009 7:59 AM, Maia Cherney wrote: 
Hi Pavel,

What is CCI Apps?, Is it a separate part of phenix? I am using the 
latest version of PHENIX, do I need to install CCI Apps, too?

Maia

Pavel Afonine wrote:
  
Hi Yusuf,

please use the latest version of PHENIX or CCI Apps and most likely 
this error will go away:
http://www.phenix-online.org/download/

Pavel.
    

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