Re: [phenixbb] how to generate sharpened map for input into Pymol

Hi Daqi, I will add this feature next week. This will be an option of phenix.maps tool. Pavel. On 4/24/10 11:23 AM, Daqi Tu wrote:

I found a convoluted way. Input Phenix map coefficients into CCP4 program CAD, apply negative B factor scaling. Then input resulting mtz file into CCP4 program FFT to generate CCP4 style map which Pymol can also read. I have not tried the new Phenix command line tool phenix.maps and do not know if it has B-factor sharpening option. But would be nice to have it, like in CNS 1.2.

Daqi

-------------------------------------------------- From: "Daqi Tu" Sent: Saturday, April 24, 2010 10:16 AM To: Cc: Subject: how to generate sharpened map for input into Pymol

...

Hi,

I am generating a electron density map figure in pymol for my structure. Since the data is very anisotropic, map sharpening has proven to be quite useful. The structure was solved using Phenix. How do I generate an Xplor style map in Phenix that incorporates sharpening?

Thanks.

Daqi Tu Postdoc Eck lab Dana-Farber Cancer Institute

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