Hello,
Is it possible to use phenix.real_space_refine with
mmcif input?
When I attempt to run as "phenix.real_space_refine
model.mmcif map.mrc" or "phenix.real_space_refine
model.cif map.mrc" I get the error "Sorry: PDB file is
needed", and looking at the documentation I cannot see how
to explicitly specify the model (there is not "model"
keyword or similar).
Anybody have a way around this? Or is there a keyword I am
missing? phenix.refine generally works fine with mmcif, but
maybe real_space_refine has not been configured to do so
yet? Would be helpful for large structures which break the
regular pdb format if so.