Hi Carsten,<div><br></div><div>Could you try this?</div><div><br></div><div><a href="http://cygwin.com/ml/cygwin/2001-01/msg00724.html">http://cygwin.com/ml/cygwin/2001-01/msg00724.html</a></div><div><br></div><div>Ralf<br>
<br><div class="gmail_quote">On Wed, Jan 4, 2012 at 6:28 PM, Schubert, Carsten [JRDUS] <span dir="ltr">&lt;<a href="mailto:CSCHUBER@its.jnj.com">CSCHUBER@its.jnj.com</a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<p dir="LTR"><span lang="en-us"><font face="Calibri">Hi,</font></span></p>

<p dir="LTR"><span lang="en-us"><font face="Calibri">After upgrading</font></span><span lang="en-us"><font face="Calibri"> my cci_apps install on Windows from 1.7-718 to 1.7.3-928</font></span><span lang="en-us"><font face="Calibri"> the interoperability with cygwin is</font></span><span lang="en-us"> <font face="Calibri">gone.</font></span><span lang="en-us"> <font face="Calibri">Calling phenix.refine just gives a</font></span><span lang="en-us"> <font face="Calibri">‘</font></span><span lang="en-us"><font face="Calibri">Command not found</font></span><span lang="en-us"><font face="Calibri">’</font></span><span lang="en-us"><font face="Calibri"> error.</font></span><span lang="en-us"> <font face="Calibri">Turns out that the</font></span><span lang="en-us"> <font face="Calibri">little .exe files for each subprogram were replaced by .bat files. That is fine if one just wants to use the DOS CLI, but</font></span><span lang="en-us"> <font face="Calibri">cygwin is not able to call</font></span><span lang="en-us"> <font face="Calibri">programs via .bat files as far as I know.</font></span><span lang="en-us"> </span></p>


<p dir="LTR"><span lang="en-us"><font face="Calibri">Is there a workaround</font></span><span lang="en-us"><font face="Calibri"> for this problem besides</font></span><span lang="en-us"><font face="Calibri"> working in the DOS CLI (yuk)?</font></span></p>


<p dir="LTR"><span lang="en-us"><font face="Calibri">Thanks </font></span></p><span class="HOEnZb"><font color="#888888">

<p dir="LTR"><span lang="en-us"><font face="Calibri">Carsten</font></span><span lang="en-us"></span></p>

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