11 Jul
                
                    2015
                
            
            
                11 Jul
                
                '15
                
            
            
            
        
    
                7:14 p.m.
            
        Hi Mark,
My last gasp:what about case where you have a not perfect model built into EM map, real space refined locally, and then would like to do a global geometry optimization?
phenix.real_space_refine uses a combination of local and global refinement methods so I would say just iterate refinement and manual rebuilding until you are done. Pavel