Hi Jason,<br>Did you try running your structure through molprobity? This will pin point the residues that need fixing.<br>Shya<br><br><div class="gmail_quote">On Wed, Apr 6, 2011 at 9:50 AM, Jason <span dir="ltr">&lt;<a href="mailto:phenix.upitt@gmail.com">phenix.upitt@gmail.com</a>&gt;</span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">Hi,<div><br></div><div>I have tried to regularize my protein structure in coot and use ramachandran restrain to improve statistics (and then release them). However, I can not make the c-beta deviation be zero. Is there some special way to improve c-beta deviation? Thanks. </div>

<div><br></div><div><br><div>======================</div>Jason<div>Structural Biology Department</div><div>University of Pittsburgh</div><div>======================</div><br>
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