Re: [phenixbb] Question about Adding Hydrogens

Hi Jared,

2. In PyMOL (or another similarly capable program), load the molecule, remove the unwanted hydrogens, and save the new pdb. If you're not familiar with PyMOL selection syntax, try something like this:

load model_reduce.pdb remove (elem H and not resi 10) save model_resi10_H.pdb, model_reduce

you could do it in PHENIX: phenix.pdbtools model_with_H.pdb remove="element H and not (chain A and resseq 10)" Pavel.