Dear Anand,

I'm sorry for the trouble!  This seems to be a failure in refinement during rebuilding.  It is possible that the error has been fixed since, so one solution is to download an even-more-recent version and try that.

Another possibility is to re-run the job with "debug=True" and then a more complete error message should be printed.

A third possibility is to send me ([email protected], off-list) all the files necessary to run the job and I will debug it here.

A fourth possibility is to look in the file

   /home/anand/Autobuild/5/AutoBuild_run_1_/TEMP0/AutoBuild_run_1_/LAST.LOG

which may have some more clues.

All the best,
Tom T
  
On Jun 1, 2011, at 1:49 AM, B. Anand wrote:

Dear All,

     I am using autobuild to rebuild the model after MR. However, it
stops with the following error which am I not able to comprehend.
Could you please shed some light on this error. Am using phenix
version  1.7.1 (Release tag:743). Thanks.

With Best Regards,
Anand

*************ERROR ENDING *******************

********************************************************************************
Failed to carry out AutoBuild_multiple_models:


********************************************************************************
Sorry, a subprocess has failed...

END OF LOG FILE /home/anand/Autobuild/5/AutoBuild_run_1_/TEMP0/RUN_FILE_1.log :

utoBuild  Run 1 Tue May 31 01:00:15 2011

Build cycle 1 of 16   method:rebuild
Initial rebuild cycle: just combining previous models or copying
over initial PDB file

Using edited_pdb.pdb for rebuild, copied to unrefined.pdb_1
Refining model:  unrefined.pdb_1
No refinement carried out (may need free R flags)
Error message from phenix.refine:  'function' object has no attribute
'as_mtz_dataset'
Refinement failed...
*************ERROR ENDING *******************

********************************************************************************
Failed to carry out AutoBuild_build_cycle:

Initial phenix refinement of AutoBuild_run_1_/edited_pdb.pdb with
exptl_fobs_phases_freeR_flags.mtz failed...quitting...
/home/anand/Autobuild/5/AutoBuild_run_1_/TEMP0/AutoBuild_run_1_/LAST.LOG
may have additional information...
'function' object has no attribute 'as_mtz_dataset'
********************************************************************************

*************ERROR ENDING *******************



********************************************************************************

*************ERROR ENDING *******************


--
B. Anand, Ph. D.
Assistant Professor
Department of Biotechnology
Indian Institute of Technology Guwahati
Guwahati 781039
Assam, India
Email: [email protected]
    [email protected]
Phone: +91-361-258 2223
Fax: +91-361-258 2249
Web: http://www.iitg.ernet.in/banand/
_______________________________________________
phenixbb mailing list
[email protected]
http://phenix-online.org/mailman/listinfo/phenixbb


Thomas C. Terwilliger
Mail Stop M888
Los Alamos National Laboratory
Los Alamos, NM 87545

Tel:  505-667-0072                 email: [email protected]
Fax: 505-665-3024                 SOLVE web site: http://solve.lanl.gov
PHENIX web site: http:www.phenix-online.org
ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu
TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
CBSS Center for Bio-Security Science web site: http://www.lanl.gov/cbss