Hi Billy,

Thanks for your email. A new version of phenix solved the problem. 
Kyung hyun

==

Kyung Hyun Kim, Ph.D.

Rm 217 Dept of Food and Nutrition

College of Science & Technology, Duksung Women's University

419 Ssangmun dong, Dobong gu, Seoul 132-714, 

Dept of Biotechnology & Bioinformatics

College of Science & Technology, Korea University, Korea

Tel : +82 2 901 8370, +82 10 9014 1416



2024년 7월 16일 (화) 오전 2:35, Billy Poon <BKPoon@lbl.gov>님이 작성:
Hi,

Did you modify or delete any group names? The error seems related to that.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Fax: (510) 486-5909


On Wed, Jul 10, 2024 at 1:46 AM <khkim@korea.ac.kr> wrote:
Dear colleagues,

Running phenix received an error (below). Status window indicates "You appear to have another session of PHENIX running already (hostname...), which has locked your project database". I had tried to change project directories. Many thanks.

Error in sys.excepthook:
Traceback (most recent call last):
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py", line 898, in _excepthook
    Error.show_exception_dialog(type, value, traceback)
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/wxGUI2/Error.py", line 76, in show_exception_dialog
    if (app.bug_timer.IsRunning() is False):
AttributeError: 'PhenixApp' object has no attribute 'bug_timer'

Original exception was:
Traceback (most recent call last):
  File "/usr/local/bin/phenix-1.20.1-4487/build/../modules/phenix/wxGUI2/command_line/main.py", line 23, in <module>
    run(sys.argv[1:])
  File "/usr/local/bin/phenix-1.20.1-4487/build/../modules/phenix/wxGUI2/command_line/main.py", line 17, in run
    wxapp = App.PhenixApp(args)
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py", line 74, in __init__
    wx.App.__init__(self, 0)
  File "/usr/local/bin/phenix-1.20.1-4487/conda_base/lib/python2.7/site-packages/wx-3.0-gtk2/wx/_core.py", line 8628, in __init__
    self._BootstrapApp()
  File "/usr/local/bin/phenix-1.20.1-4487/conda_base/lib/python2.7/site-packages/wx-3.0-gtk2/wx/_core.py", line 8196, in _BootstrapApp
    return _core_.PyApp__BootstrapApp(*args, **kwargs)
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py", line 120, in OnInit
    self.start_gui()
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py", line 191, in start_gui
    self.launch_main()
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/wxGUI2/App.py", line 507, in launch_main
    frame = PhenixGUI()
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/wxGUI2/Home/Main.py", line 51, in __init__
    self.setup_panels()
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/wxGUI2/Home/Main.py", line 171, in setup_panels
    self.refresh_project_list()
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/wxGUI2/Home/Main.py", line 360, in refresh_project_list
    self.add_projects(group_name=current_group)
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/wxGUI2/Home/Main.py", line 352, in add_projects
    group_name=group_name)
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/phenix/tracking/project_db.py", line 72, in get_project_summaries
    group_id = self.get_group_id_by_name(to_unicode(group_name))
  File "/usr/local/bin/phenix-1.20.1-4487/modules/phenix/phenix/tracking/project_db.py", line 608, in get_group_id_by_name
    assert (name in [None, "None", "All", "All groups"])
AssertionError
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