Pavel,
Sometimes truncation/mutation to poly-gly or poly-Ser is
desirable. If not already present could this be another option? Another
interesting option would be to be able to change OR keep the residue names of
the template to be mutated. Sometimes it is useful to chop the sidechains, but
still be able to tell what residue this is supposed to be via the residue name.
Again some of this may already be present, haven’t had a chance to play around
with this.
From: [email protected]
[mailto:[email protected]] On Behalf Of Pavel Afonine
Sent: Wednesday, May 13, 2009 3:56 PM
To: PHENIX user mailing list
Subject: Re: [phenixbb] mutate to polyAla
I just realized that you could do it even without using
truncate_to_polyala:
phenix.pdbtools model.pdb keep="backbone"
or, equivalently:
phenix.pdbtools model.pdb remove="sidechain"
and it works for both: proteins and RNA/DNA.
Pavel.
On 5/13/09 12:43 PM, Francis E Reyes wrote:
Though the original question was for protein, is there a mutate to
poly C for RNA as well? :)