Dear all,

I have a question to your kindest attention.

We were trying to run today phenix on distant cluster (phenix-1.3) with next command line

phenix.autobuild data=data.mtz solvent_fraction=0.6 ps_in_rebuild=True   \
input_pdb_file=model.pdb maps_only=True


Autobuild failed with these last lines in the Autobuild_run_1_1.log

Failed to carry out AutoBuild_multiple_models:

Sorry, subprocess failed...message is:
********************************************************************************
phenix.autobuild   \

write_run_directory_to_file=/home/btn1/tn_phenix/refine/final_loops/with_ncs_H/no_wateradd_noH/prime_switch/AutoBuild_run_1_/TEMP0/INFO_FILE_1
Reading effective parameters from /home/btn1/tn_phenix/refine/final_loops/with_ncs_H/no_wateradd_noH/prime_switch/AutoBuild_run_1_/TEMP0/PARAMS_1.eff
Sending output to  AutoBuild_run_1_/AutoBuild_run_1_1.log
********************************************************************************
Failed to carry out AutoBuild_build_cycle:

failure
********************************************************************************


in Autobuild_run_1_/TEMP0/Autobuild_run_1_/Autobuold_run_1_1.log the failure message is next:

Columns of data in AutoBuild_run_1_/TEMP0/TEMP.mtz:
H K L FMODEL PHIFMODEL FP SIGFP 2FOFCWT PH2FOFCWT
child process stderr output:
  command: 'AutoBuild_run_1_/TEMP0/temporary.com'
   resolve_giant:  Error in label assignments
Failed to run resolve
----------------------------------
TRIED resolve_giant ...but not OK

********************************************************************************
Failed to carry out AutoBuild_build_cycle:

failure
********************************************************************************


There are temporary.com and temporary.com.bak in the folder and there is only difference, except that
in temporary.com there is "labin FP=FP FC=FMODEL PHIC=PH2FOFCWT FWT=2FOFCWT"
in temporary.com.bak there is "labin FP=FP FC=FMODEL PHIC=PHI2FOFCWT FWT=2FOFCWT"

Prime_and_switch.log file ends with

Reading SG information from
 TEMP.mtz                                                                      
 
 Space group name: P21212     Point group: 222      
 Space group number :          18  Symmetry operators:            4
 Number of columns:            9
 H                             K                            
 L                             FMODEL                       
 PHIFMODEL                     FP                           
 SIGFP                         2FOFCWT                      
 PH2FOFCWT                    
 
 ***  Warning
 From LRASSN : User input label PHI2FOFCWT does not match any file label
 
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 resolve_giant:  Error in label assignments
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I checked created TEMP.mtz, it looks like:
* Column Labels :

 H K L FMODEL PHIFMODEL FP SIGFP 2FOFCWT PH2FOFCWT

So the question is next:  Why is prime_and_switch process looking for the "right" labels (PH2FOFCWT), which are present in previously created TEMP.mtz file,  but sees them wrong (PHI2FOFCWT)? Is this possible that we have somewhat wrong inputs or is there problem with the set of commands?


Sincerely,
Tanya