Re: [phenixbb] fwd: Resolve on Mac

Dear Jim and others, Jumping on this thread probably too late... I found the same problem just two weeks ago. Never found the reason, but after installing the 1.4-4 prerelease version of phenix, this error vanished. In our case, the job concerned H32 data with rather big cell dimensions. Version 1.4-3 crashed with the memory problem after having tried resolve_extra_huge. In version 1.4-4, resolve_extra_huge managed to find all the memory required. Best, Miguel Le 23 avr. 09 à 19:27, Nathaniel Echols a écrit :

(Forwarded on behalf of James Naismith - I have no idea why the server rejected this message.)

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From: James Naismith Date: April 23, 2009 9:24:05 AM PDT To: [email protected] Subject: Resolve on Mac

This is not a bug but some feature of the new Mac (or perhaps mine is broken).

Tom Terwilliger can run the same job on his older Mac and on Linux. However, with my new Mac resolve complains that it can't allocate enough memory.

Since my machine has 8GB of memory and Tom's has 2 GB, it is something to do with the esetup either Mac or Phenix.

I am a newbie on the Mac, I wondered if anyone could help me. (Tom is also new to Mac and agreed to my posting here).

best Jim

Hardware Overview:

Model Name: MacBook Pro Model Identifier: MacBookPro5,2 Processor Name: Intel Core 2 Duo Processor Speed: 2.93 GHz Number Of Processors: 1 Total Number Of Cores: 2 L2 Cache: 6 MB Memory: 8 GB Bus Speed: 1.07 GHz Boot ROM Version: MBP52.008E.B00 SMC Version: 1.42f4 Serial Number: W89090Y82QT Sudden Motion Sensor: State: Enabled

-- James H. Naismith FRSE | mailto:[email protected] Professor of Chemical Biology | mailto:[email protected] (teaching) Centre for Biomolecular Sciences|Office: (44) or (0) 1334463792 The North Haugh |Secretary: (44) or (0) 1334463401 The University Sciences |Fax: (44) or (0) 1334467229 Fife KY16 9ST U.K. |http://www.st-and.ac.uk/~strucbio

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-- Miguel Ortiz Lombardía Architecture et Fonction des Macromolécules Biologiques UMR6098 ( CNRS, U. de Provence, U. de la Méditerranée ) Case 932 163 Avenue de Luminy 13288 Marseille cedex 9 France Tel : +33(0) 491 82 55 93 Fax: +33(0) 491 26 67 20 e-mail: [email protected] Web: http://www.pangea.org/mol/spip.php?rubrique2 -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.