Hi Peter,
I think that the missing 'task' tab is a feature. Look under 'projects' -> 'preferences' to have the task window displayed.
Thanks for that. Yes, now I can see my 'Tasks' tab (perhaps the tutorial at http://www.phenix-online.org/download/documentation/phenix/prerelease/introd... could be updated to reflect the fact that 'Tasks' are hidden by default?). Unfortunately, however, I was still unable to work out how I can use phenix to generate phases and FOMs from a PDB model (from simulated annealing in phenix.refine) for use in the prime-and-switch strategy. The map_coeffs.mtz from phenix.refine does not seem to have all of the requisite columns... Is there a 'phenix' way to do this, or should I just use SFALL? Also, while we are talking about map_coeffs.mtz, is there a command-line flag to turn off the automatic map generation by phenix.refine? I use coot to generate my maps from map_coeffs.mtz on the fly, so I would prefer not to have phenix.refine make maps for me. And one last question, just for fun. Can phenix.refine handle 'hard' (constrained, strict) NCS? I am working at low res with 4 molecules per ASU and would prefer to just have one chain modelled plus an NCS matrix to generate the other chains. However, all the documentation I have read leads me to believe that only 'soft' (restrained) NCS is possible at the moment. Is this the case? Thanks again, Stephen -- Dr Stephen Graham Nuffield Medical Fellow Division of Structural Biology Wellcome Trust Centre for Human Genetics Roosevelt Drive Oxford OX3 7BN United Kingdom Phone: +44 1865 287 549