D'oh ignore this... I likely can specify the full path name to the reference.pdb in the refine parameters. Sorry to flood your inboxes. F On Aug 23, 2011, at 10:36 AM, Francis E Reyes wrote:
Hi all
While it is possible to generate refinement parameters to pass into autobuild, how does one pass the reference structure into the autobuild jobs if one were to refine using geometry restraints from the reference structure? (command line autobuild)
If I can't supply the reference pdb, is there a phenix cmd utility that'll spit out all the restraints given a pdb so I can supply them in the refinement parameters file?
F
--------------------------------------------- Francis E. Reyes M.Sc. 215 UCB University of Colorado at Boulder
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