You just need to do lots of rebuilding. I look at any clashscore above 0.7 first.  For rotamer outliers, try all the rotamers suggested by Coot. Sometimes you have to adjust the backbone to fit the correct rotamer into density. 
Tim

On Dec 2, 2011, at 6:21 AM, Dialing Pretty wrote:


Hi All,

Will you please tell me the acceptable clashscore analyzed by MolProbity?And any suggestions to reduce  rotamer outliers?

Cheers,

Dialing

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