Hi Dialing, H geometry should be ideal after phenix.refine. If it is not the case then please send me the PDB and I will have a look. Pavel On 12/6/11 3:49 AM, Dialing Pretty wrote:
Dear All,
I did a Phenix refine, and before the refine all the H were added. MolProbity analysis demonstrated that almost everything are acceptable after the refinement.
However when I did the geometry analysis by the COOT validation, I find all the residues having a significant deviation bond involving H. with z score higher than 7.
I am looking forward to getting an explanation from you on it,including how to avoid it.
Cheers,
Dialing
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb