Both CCP4's PDBSET and COOT should do what you want (i.e. offset the numbering by 250)

Phil Jeffrey
Princeton

From: phenixbb-bounces@phenix-online.org [phenixbb-bounces@phenix-online.org] on behalf of Rojan Shrestha [rojan@riken.jp]
Sent: Thursday, February 27, 2014 12:21 AM
To: PHENIX user mailing list
Subject: [phenixbb] Option for renumber the pdb

Hello,

I have found the program phenix.pdbtools. Maybe, it can renumber residues of pdb. I have found the options renumber_residues options but I am unable to see the options for starting residues.

I have pdb starts from 1 and want to renumber 1 into 250. Can somebody tell me how to put the option for starting residue?

Regards,

Rojan