In your phenix parameter, select “phs” as map_coeffcients_format, the phs file can be read directly by xfit. Below is my parameter’s map section:

electron_density_maps {

map_format = *xplor

map_coefficients_format = *mtz *phs

suppress = None

map {

mtz_label_amplitudes = "2FOFCWT_new"

mtz_label_phases = "PH2FOFCWT_new"

likelihood_weighted = True

obs_factor = 2

calc_factor = 1

}

map {

mtz_label_amplitudes = "FOFCWT_new"

mtz_label_phases = "PHFOFCWT_new"

likelihood_weighted = True

obs_factor = 1

calc_factor = 1

}

Regards,

Tongqing

Tongqing Zhou, Ph.D.

Staff Scientist

Structural Biology Section

Vaccine Research Center, NIAID/NIH

Building 40, Room 4607B

40 Convent Drive, MSC3027

Bethesda, MD 20892

(301) 594-8710 (Tel)

(301) 793-0794 (Cell)

(301) 480-2658 (Fax)

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From: David Shin [mailto:[email protected]]
Sent: Tuesday, January 04, 2011 10:33 PM
To: [email protected]
Subject: [phenixbb] viewing maps in xfit

Hi -

Anyone have a script to convert phenix .mtz output so I can read in maps in xfit? I still find xfit handy for a few things.