When making an composite omit map in Phenix 1.6 GUI, the final
“resolve_composite_map.mtz” file won’t load in coot or pymol.
When I click the little magnifying glass on the Summary page, Phenix states that
it can’t find the file, even though I can see it when using Finder (Mac OS).
The final lines of the run status are below:
Putting all omit results in AutoBuild_run_61_/OMIT
OMIT results in AutoBuild_run_61_/OMIT :
['overall_best.pdb_OMIT_REGION_1',
'overall_best.pdb_OMIT_REGION_10', 'overall_best.pdb_OMIT_REGION_11',
'overall_best.pdb_OMIT_REGION_12', 'overall_best.pdb_OMIT_REGION_2',
'overall_best.pdb_OMIT_REGION_3', 'overall_best.pdb_OMIT_REGION_4',
'overall_best.pdb_OMIT_REGION_5', 'overall_best.pdb_OMIT_REGION_6',
'overall_best.pdb_OMIT_REGION_7', 'overall_best.pdb_OMIT_REGION_8',
'overall_best.pdb_OMIT_REGION_9', 'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_1',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_10',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_11',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_12',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_2',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_3',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_4',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_5',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_6',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_7',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_8',
'overall_best_denmod_map_coeffs.mtz_OMIT_REGION_9',
'resolve_composite_map.mtz']
Combining all 12 omit regions in AutoBuild_run_61_/OMIT
No background map in composite map
Composite omit result is in
/Users/carlcarruthers/Crystallography/AutoBuild_run_61_/OMIT/resolve_composite_map.mtz
Possible operation: finished
Required antecedents: []
Expected results: []
Application method: finished
Yes, have antecedents...
Resulting expectation:10000.0
Am I doing something wrong? Is it a
bug? Thanks for helping a crystallogaophy newb (this is my first model!)…
Carl
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