I couldn't get the source code to compile- the final message was: "error: configuration step incomplete, exiting". Any ideas?
Thanks,
-Sam
[A copy of my problem is pasted here]:
I'm running the latest complete version of phenix (version 1.4-147, on
Linux 2.6-x86 64). When I run my .csh file I get the following error
(with the 4 previous lines included):
/usr/local/phenix/phenix-1.4-147/build/intel-linux-2.6-x86_64/base/bin/python(PyDict_SetItem+0x1fd) [0x446bdd]
/usr/local/phenix/phenix-1.4-147/build/intel-linux-2.6-x86_64/base/bin/python [0x4396e4]
/usr/local/phenix/phenix-1.4-147/build/intel-linux-2.6-x86_64/base/bin/python [0x4470a9]
/lib64/libc.so.6 [0x30fca322a0]
Segmentation fault (Python and libc call stacks above)
This crash may be due to a problem in any imported
Python module, including modules which are not part
of the cctbx project. To disable the traps leading
to this message, define these environment variables
(e.g. assign the value 1):
BOOST_ADAPTBX_FPE_DEFAULT
BOOST_ADAPTBX_SIGNALS_DEFAULT
This will NOT solve the problem, just mask it, but
may allow you to proceed in case it is not critical.
When
I type the command "setenv BOOST_ADAPTBX_FPE_DEFAULT 1" and then run my
.csh file, it runs for a slightly longer period of time before ending
with a different error:
311240e000-3112410000 rw-p 0000e000 fd:00 14237822 /lib64/libbz2.so.1.0.4
2ad973412000-2ad973414000 rw-p 2ad973412000 00:00 0
2ad973429000-2ad97346d000 rw-p 2ad973429000 00:00 0
2ad97346e000-2ad9734af000 rw-p 2ad97346e000 00:00 0
2ad9734e1000-2ad973563000 rw-p 2ad9734e1000 00:00 0
2ad973563000-2ad973567000 r-xp 00000000 fd:00 5727920 /usr/local/phenix/phenix-1.4-147/build/intel-linux-2.6-x86_64/base/lib/python2.6/lib-dynload/time.so
2ad973567000-2ad973666000 ---p 00004000 fd:00 5727920 /usr/local/phenix/phenix-1.4-147/build/intel-linux-2.6-x86_64/base/lib/python2.6/lib-dynload/time.so
2ad973666000-2ad973668000 rw-p 00003000 fd:00 5727920 /usr/local/phenix/phenix-1.4-147/build/intel-linux-2.6-x86_64/base/lib/python2.6/lib-dynload/time.so
2ad973668000-2ad97366d000 r-xp 00000000 fd:00 5727941 /usr/local/phenix/phenix-1.4-147/build/intel-linux-2.6-x86_64/base/lib/python2.6/lib-dynload/select.so
2ad97366d000-2ad97376c000 ---p 00005000 fd:00 5727941 /usr/local/phenix/phenix-1.4-147/build/intel-linux-2.6-x86_64/base/lAbort
However, the file ran fine and successfully output an
improved .pdb file without any BOOST-related problems on my PI's Mac-
she is running version 95 of Phenix (which I was unable to obtain for
linux- is it available somewhere?)
Can you help me with this?
Thanks!
-Sam