Hi Subhani,<div><br></div><div>Are you using torsion NCS restraints? If so, the problem is the rotamer outlier/consistency methods. We are aware of the problem, and are working on a fix. In the meantime, if you turn off rotamer outlier correction and sidechain rotamer consistency in the torsion NCS options, that should avoid the problem with the current version of Phenix.</div>

<div><br></div><div>Jeff<br><br><div class="gmail_quote">On Fri, Jun 22, 2012 at 7:02 AM, Subhani Bandara <span dir="ltr">&lt;<a href="mailto:ramssb17@gmail.com" target="_blank">ramssb17@gmail.com</a>&gt;</span> wrote:<br>

<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi everyone,<div><br></div><div>I got the following error message while running refinement in mac, using PHENIX-1.8-1069. This occured when refined after editing Ramachandran outliers in coot, without applying Ramachandran restraints. Not sure wether it has something to do with this.</div>


<div><br></div><div>














<p class="MsoNormal"><span style="font-family:Courier">RuntimeError : Estimated memory allocation for
cubicles exceeds max_number_of_bytes:</span></p>

<p class="MsoNormal"><span style="font-family:Courier"> 
This may be due to unreasonable parameters:</span></p>

<p class="MsoNormal"><span style="font-family:Courier">    cubicle_edge=5</span></p>

<p class="MsoNormal"><span style="font-family:Courier">    space_span=(3528.41,3528.41,3442.53)</span></p>

<p class="MsoNormal"><span style="font-family:Courier">    n_cubicles=(706,706,689)</span></p>

<p class="MsoNormal"><span style="font-family:Courier">   
max_number_of_bytes=<a href="tel:2147483648" value="+12147483648" target="_blank">2147483648</a></span></p><p class="MsoNormal"><span style="font-family:Courier"><br></span></p><p class="MsoNormal"><span style="font-family:Courier">Any suggestions!</span></p>

<p class="MsoNormal"><span style="font-family:Courier"><br>
</span></p><p class="MsoNormal"><span style="font-family:Courier">Thanks</span></p><span class="HOEnZb"><font color="#888888"><p class="MsoNormal"><span style="font-family:Courier">Subhani </span></p>

</font></span></div>
<br>_______________________________________________<br>
phenixbb mailing list<br>
<a href="mailto:phenixbb@phenix-online.org">phenixbb@phenix-online.org</a><br>
<a href="http://phenix-online.org/mailman/listinfo/phenixbb" target="_blank">http://phenix-online.org/mailman/listinfo/phenixbb</a><br>
<br></blockquote></div><br></div>