Hi Dialing,
How many sigmas are each of these outliers? Are there any other
problems near these angles, such as a Ramachandran outlier or any
steric clashes? It could be that these prolines are trapped in the
wrong rotamer, but it's hard to say without seeing the model and data.
What is the resolution?
Jeff
On Tue, Dec 13, 2011 at 4:28 PM, Dialing Pretty
Dear All,
After a key step refinement byPhenix refine, I find there are 2 residues (total about 450 residues) with bad angles as analyzed by MolProity (deviation ratio 0.46%, goal is 0.1% ), both of the 2 residues are Pro, and both of the deviation angles are C-N-CA.
Will you please give the comment on what do the 2 deviations mentioned above mean for my whole protein structure, or should I continue to refine my protein structure?
I am looking forward to getting your reply.
Dialing
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