7 Oct
2007
7 Oct
'07
4:26 p.m.
There is a little problem here. The ASN residues which are not glycosylation sites have both HD21 and HD22. If I simply replace HD22 with HD21, those ASN residues will have two HD21 atoms. So it is more complicated than one line sed script. Jianghai +++++++++++++++++++++++++++++++ Jianghai Zhu, Ph.D CBR Institute for Biomedical Research Department of Pathology Harvard Medical School 200 Longwood Ave., Boston, MA 02115 Ph: 617-278-3211 Fx: 618-278-3232 +++++++++++++++++++++++++++++++ On Oct 7, 2007, at 12:20 PM, Ralf W. Grosse-Kunstleve wrote:
Thanks for reporting this problem! While we work on a fix, you can easily patch your PDB files like this:
sed 's/HD22 ASN/HD21 ASN/' good.pdb > better.pdb
Ralf