Hi Maia,

it would be helpful if you can send us the PDB file so we can reproduce and fix this problem (send it to my address, not to the whole bb).

Pavel.

On 6/10/09 11:06 AM, Maia Cherney wrote:

Thank you Francis and Sabine for your help.

phenix.print_sequence worked fine. The only problem I had with one pdb, 
for some reason the sequence of each subunit was doubled. There was no 
such problem with the pdbset.

Maia


Maia

Francis E Reyes wrote:

phenix.print_sequence


phenix.* has a lot of good utils I didnt know about until I tab 
completed it.

FR

On Jun 8, 2009, at 9:17 AM, chern wrote:

Hi everybody,

I am building a model of protein and the sequence has wrong parts. I 
want to compare it to the original sequence side-by-side. How can I 
extract a one-letter sequence from the pdb file?  This information 
should be easily generated by auto build. I mean, I give the pdb and 
get the fasta format sequence.

Maia
_______________________________________________
phenixbb mailing list
[email protected]
http://www.phenix-online.org/mailman/listinfo/phenixbb

---------------------------------------------
Francis Reyes M.Sc.
215 UCB
University of Colorado at Boulder

gpg --keyserver pgp.mit.edu --recv-keys 67BA8D5D

8AE2 F2F4 90F7 9640 28BC  686F 78FD 6669 67BA 8D5D


------------------------------------------------------------------------

_______________________________________________
phenixbb mailing list
[email protected]
http://www.phenix-online.org/mailman/listinfo/phenixbb


_______________________________________________
phenixbb mailing list
[email protected]
http://www.phenix-online.org/mailman/listinfo/phenixbb