Thanks a lot Nat, I have a try! Best regards, Guenter

On Fri, Oct 11, 2013 at 3:30 AM, Guenter Fritz mailto:[email protected]> wrote:

I am working on a 3.6 A structure and want to try the latest joint development of phenix and rosetta. Is there are kind of "how_to" available online? Some do's and don'ts?

Yes, it's not as complete as I'd like, but here is the current documentation:

https://www.phenix-online.org/version_docs/dev-1506/rosetta_refine.htm

Hopefully installation will be less traumatic in the near future - I need to do some more experimenting with our installers but I was holding back so we could release a new Phenix first.

I think for the long term we will need to come up with a variety of "recipes" for using Rosetta - like phenix.refine, it is extremely flexible, but the default behavior is tuned for a specific class of problems.

-Nat

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Yes, you should download one of the weekly releases of Rosetta. On Fri, Oct 11, 2013 at 11:57 AM, Guenter Fritz < [email protected]> wrote:

PS, in the paper you write that it only works with Rosetta 3.6; there is only Rosetta 3.5 so far. Should one use the latest build? Thanks, Guenter

On Fri, Oct 11, 2013 at 3:30 AM, Guenter Fritz < [email protected]> wrote:

...

I am working on a 3.6 A structure and want to try the latest joint development of phenix and rosetta. Is there are kind of "how_to" available online? Some do's and don'ts?

Yes, it's not as complete as I'd like, but here is the current documentation:

https://www.phenix-online.org/version_docs/dev-1506/rosetta_refine.htm

Hopefully installation will be less traumatic in the near future - I need to do some more experimenting with our installers but I was holding back so we could release a new Phenix first.

I think for the long term we will need to come up with a variety of "recipes" for using Rosetta - like phenix.refine, it is extremely flexible, but the default behavior is tuned for a specific class of problems.

-Nat

_______________________________________________ phenixbb mailing [email protected]http://phenix-online.org/mailman/listinfo/phenixbb

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

On Sun, Oct 13, 2013 at 2:06 PM, Morten Grøftehauge < [email protected]> wrote:

So I'm guessing no RNA means no DNA either? And no twin laws?

I think no nucleic acids at all, but I will double-check. I believe someone is working on fixing this limitation but apparently it's a huge undertaking. Twin laws could work in theory and we had the necessary code in there at one point, but we never actually tested it. I will see if we can restore this capability. -Nat