Hi, yes, you can split your model into several PDB files and give it to phenix.refine: internally it will combine all input PDB contents into one model and use it. You can also use iotbx.pdb.join_fragment_files A.pdb B.pdb C.pdb to merge multiple PDB file into one. Note, multiple model files (files containing several models split by MODEL-ENDMDL) are not supported in phenix.refine, although supported in phenix.model_vs_data, phenix.maps, phenix.fmodel, etc. Pavel. On 5/11/11 1:43 PM, [email protected] wrote:

Hi,

I just wonder for the huge systems which have been split multiple pdb entries, if I provide all the pdb files in a single script of phenix.refine:

phenix.fmodel A.pdb B.pdb C.pdb data.mtz

whether everything will go correctly? Or I have to merge them into a single pdb and renumber all atoms sequentially?

Thanks!

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