Hi, I got the following error from phenix.refine version 1.3-rc4. iotbx.reflection_file_utils.Sorry_Not_a_suitable_array: Not a suitable array of experimental phases: refineme nt.input.experimental_phases.labels=HLAM,HLBM,HLCM,HLDM What is the problem? -- Jianghai
Try updating to phenix 1.3-final to see if the problem has been fixed. On Sep 25, 2008, at 11:53 AM, Jianghai Zhu wrote:
Hi,
I got the following error from phenix.refine version 1.3-rc4.
iotbx.reflection_file_utils.Sorry_Not_a_suitable_array: Not a suitable array of experimental phases: refineme nt.input.experimental_phases.labels=HLAM,HLBM,HLCM,HLDM
What is the problem?
-- Jianghai
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iotbx.reflection_file_utils.Sorry_Not_a_suitable_array: Not a suitable array of experimental phases: refineme nt.input.experimental_phases.labels=HLAM,HLBM,HLCM,HLDM
phenix.refine (more precisely, iotbx.reflection_file_utils) applies a bunch of heuristics to make sense of the inputs ("what's f-obs, what's r-free-flags", etc.). Somehow your array isn't compatible with the expectations. I'm guessing because all Hendrickson-Lattman coefficients are zero. You can find out like this: phenix.mtz.dump your.mtz --show-column-data --column-data-format=human_readable If my guess isn't correct, could you send me your mtz file, or at least the output of just phenix.mtz.dump (i.e. just the summary, without the data)? Ralf
Yes, a mistake was made in my mtz file. All HL coefficients were zero. Now is fine. Thanks a lot. -- Jianghai On Sep 25, 2008, at 3:07 PM, Ralf W. Grosse-Kunstleve wrote:
iotbx.reflection_file_utils.Sorry_Not_a_suitable_array: Not a suitable array of experimental phases: refineme nt.input.experimental_phases.labels=HLAM,HLBM,HLCM,HLDM
phenix.refine (more precisely, iotbx.reflection_file_utils) applies a bunch of heuristics to make sense of the inputs ("what's f-obs, what's r-free-flags", etc.). Somehow your array isn't compatible with the expectations. I'm guessing because all Hendrickson-Lattman coefficients are zero. You can find out like this: phenix.mtz.dump your.mtz --show-column-data --column-data- format=human_readable If my guess isn't correct, could you send me your mtz file, or at least the output of just phenix.mtz.dump (i.e. just the summary, without the data)?
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participants (3)
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Jianghai Zhu -
Paul Adams -
Ralf W. Grosse-Kunstleve