Hi Christian, Yes, this is a bit of a problem. As you figured out, you can restart mr_rosetta after a completed stage such as rosetta_rebuild, but not from the middle of a stage. If you complete a stage manually (as you did) there is no solutions.pkl file to tell mr_rosetta what has been done, so it is not able to go on from there. Instead, what you might try (if feasible in your case) is choose the best rosetta model or models (based on scores). Then put those together to make a new complex...and then start all over with that as your new model (with already_placed=True), or put it into autobuild and then recycle it in mr_rosetta. This is more or less what mr_rosetta was going to do. Let me know if that doesn't work, All the best, Tom T ________________________________________ From: phenixbb-bounces@phenix-online.org [phenixbb-bounces@phenix-online.org] on behalf of Christian Becke [christian.becke@fu-berlin.de] Sent: Tuesday, May 21, 2013 6:36 AM To: phenixbb@phenix-online.org Subject: [phenixbb] mr_rosetta: how to continue from recovered mr_protocols.default run Hi, I am trying mr_rosetta on a complex. At the GROUP_OF_ROSETTA_REBUILD stage, my machine ran out of memory and the mr_protocols.default processes were killed. After adding more swap space, I restarted the mr_protocols.default runs (3 parallel jobs, one for each chain) using the scripts RUN_?/WORK_?/run_rebuild.sh, which appear to have finished correctly (i.e., there are 20 pdb files generated for each of the chains). However, I could not figure out how to restart mr_rosetta so that it picks up these models. Any suggestions? Thanks, Christian _______________________________________________ phenixbb mailing list phenixbb@phenix-online.org http://phenix-online.org/mailman/listinfo/phenixbb