Unable to install phenix 1.8.1-1168 on Scientific Linux 6.3 64 bits
Dear all,
I am unable to install phenix 1.8.1-1168 on Scientific Linux 6.3 64
bits. Hence, I would greatly appreciate any 2 cents (or diamonds).
I installed Scientific Linux 6.3 64 bits, updated everything and
installed a couple of things that I think would be necessary. Then I
uncompressed phenix-installer-1.8.1-1168-intel-linux-2.6-x86_64-fc3.tar
to /tmp and tried to install, however I got some errors. Hence, I
installed a couple more things and tried installing again.
This time it went through most of the installation but failed during the
configuration of phenix packages.
**** Here is my shell output:
[root@scientifix phenix-installer-1.8.1-1168]# ./install
==========================================================================
PHENIX Installation
version: 1.8.1
release tag: 1168
machine type: intel-linux-2.6-x86_64
source machine type: intel-linux-2.6-x86_64
OS version: linux
user shell: /bin/bash
destination: /usr/local
=========================================================================
==========================================================================
Installing from binary bundle
==========================================================================
bundle file:
bundle-1.8.1-1168-intel-linux-2.6-x86_64.tar.gz
PHENIX installation source directory set to:
/tmp/phenix-installer-1.8.1-1168
PHENIX installation target directory
On Fri, Jan 25, 2013 at 4:15 PM, Davi de Miranda Fonseca
I installed Scientific Linux 6.3 64 bits, updated everything and installed a couple of things that I think would be necessary. Then I uncompressed phenix-installer-1.8.1-1168-intel-linux-2.6-x86_64-fc3.tar to /tmp and tried to install, however I got some errors. Hence, I installed a couple more things and tried installing again.
The first thing to try when something like this happens is to download one of the other 64-bit installers. In most cases the fc3 build is preferred, but there are some newer distributions where an installer built on a more recent version of Fedora is preferable. I would start with fc8 and work your way up. The second thing to try, if all of the binary installers fail, is to install from source.
***** And here are the last lines of /tmp/phenix-installer-1.8.1-1168/build-binary/intel-linux-2.6-x86_64/scientifix/log/binary.log: ... /usr/local/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/base/bin/python: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /usr/local/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/base/bin/python)
By the way, Scientific linux 6.3 comes with glibc 2.12.
To be honest I simply don't understand library versioning issues - the Fedora 3 machine we build that installer on currently has glibc 2.3, so I don't know where the GLIBC_2.14 is coming from. I think it will be significantly more work to figure out a workaround than trying the other installers, though. Unfortunately we do not actually have a Scientific Linux system here - the closest I could find was CentOS 6.2, and that works okay. -Nat
participants (2)
-
Davi de Miranda Fonseca
-
Nathaniel Echols