Hi Oliver, Thank you for pointing this out. We will work on this and this feature should become available shortly. Meanwhile, I would recommend to use phenix.pdb_as_cif command-line tool to convert pdb files to mmcif as it would preserve more information (for example, secondary structure annotations). Best regards, Oleg Sobolev. On Sat, Sep 24, 2016 at 2:22 AM, Oliver Clarke wrote:

Any chance of getting mmcif output in phenix.real_space_refine? Or does it exist and I have just overlooked the option? Right now I can use mmcif as input, but the refined coordinates are still written as pdb (hybrid32). The PDB unfortunately doesn’t accept hybrid32, so I always need to convert to mmcif with phenix.pdbtools prior to deposition - no big deal but would make life easier for large-ish structures.

Cheers Oli. _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]