Error very small nonbonded interaction distances.
Dear Ahmad, the error message means exactly what it says: the model contains perfectly overlapping atoms, many perfectly overlapping atoms. That isn't very realistic and requires your attention! My suggestion is: please have a closer look at the model and resolve the outstanding clashes. Good luck! Pavel On 8/20/19 22:17, Ahmad Khalifa wrote:
Hello,
I attached the log file below.
Best regards.
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Ahh, I had duplicate chains combined together, thanks!
On Wed, Aug 21, 2019 at 1:25 AM Pavel Afonine
Dear Ahmad,
the error message means exactly what it says: the model contains perfectly overlapping atoms, many perfectly overlapping atoms. That isn't very realistic and requires your attention! My suggestion is: please have a closer look at the model and resolve the outstanding clashes.
Good luck! Pavel
On 8/20/19 22:17, Ahmad Khalifa wrote:
Hello,
I attached the log file below.
Best regards.
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participants (2)
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Ahmad Khalifa -
Pavel Afonine