Okay this is a bit frustrating. Trying to run a simple omit map. Have a mtz file used for refinement and the out pdb file from refinement and every time I try to run the script it comes up with No PDB file defined error. Check both files and they appear fine. System is a Mac-Pro running Sierra. Thanks in advance. Leonard M. Thomas Ph.D. Macromolecular Crystallography Laboratory Oklahoma COBRE in Structural Biology Price Family Foundation Institute of Structural Biology Department of Chemistry and Biochemistry University of Oklahoma Stephenson Life Sciences Research Center 101 Stephenson Parkway Norman, OK 73019 405-325-1126 [email protected] http://barlywine.chem.ou.edu http://structuralbiology.ou.edu
Could you please send relevant inputs (PDB, MTZ files?) and tell how you run the program (command line? GUI? Any non-default options?). I need to reproduce this problem in order to tell what's happening and suggest a work-around. Thanks, Pavel On 1/31/17 08:51, Thomas, Leonard M. wrote:
Okay this is a bit frustrating. Trying to run a simple omit map. Have a mtz file used for refinement and the out pdb file from refinement and every time I try to run the script it comes up with No PDB file defined error. Check both files and they appear fine. System is a Mac-Pro running Sierra.
Thanks in advance.
Leonard M. Thomas Ph.D. Macromolecular Crystallography Laboratory Oklahoma COBRE in Structural Biology Price Family Foundation Institute of Structural Biology Department of Chemistry and Biochemistry University of Oklahoma Stephenson Life Sciences Research Center 101 Stephenson Parkway Norman, OK 73019 405-325-1126 [email protected] http://barlywine.chem.ou.edu http://structuralbiology.ou.edu _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]
Hi Thomas,
Which version of Phenix are you using?
Do you use the GUI or the command line?
Best wishes,
Dorothee
On Tue, Jan 31, 2017 at 8:51 AM, Thomas, Leonard M.
Okay this is a bit frustrating. Trying to run a simple omit map. Have a mtz file used for refinement and the out pdb file from refinement and every time I try to run the script it comes up with No PDB file defined error. Check both files and they appear fine. System is a Mac-Pro running Sierra.
Thanks in advance.
Leonard M. Thomas Ph.D. Macromolecular Crystallography Laboratory Oklahoma COBRE in Structural Biology Price Family Foundation Institute of Structural Biology Department of Chemistry and Biochemistry University of Oklahoma Stephenson Life Sciences Research Center 101 Stephenson Parkway Norman, OK 73019 405-325-1126 [email protected] http://barlywine.chem.ou.edu http://structuralbiology.ou.edu _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]
participants (3)
-
Dorothee Liebschner -
Pavel Afonine -
Thomas, Leonard M.