Dear Nat Indeed the python is not the one distributed with Phenix! which python /usr/bin/python python -c "import socket" no output at all! I change the python and now is installed! thanks! felipe On 12/19/2014 04:25 PM, Nathaniel Echols wrote:

Error messages like "ImportError: No module named site" usually indicate that a Python installation is seriously broken. The intent was to use the Python distributed with Phenix but it looks like Rosetta's build system makes additional Python calls that may use a different interpreter. What is the output of these commands?

which python python -c "import socket"

-Nat

On Thu, Dec 18, 2014 at 4:36 AM, Felipe Trajtenberg mailto:[email protected]> wrote:

Dear all,

I am trying to build the hybrid installation between Rosetta and Phenix using the rosetta.build_phenix_interface command

Phenix version: phenix-1.9-1692 Rosetta version: rosetta_2014.35.57232

I have no problem in compiling rosetta alone but when I try to build the hybrid system I get the following error:

False scons: Reading SConscript files ... Running versioning script ... Done. (0.0 seconds) Could not find platform independent libraries <prefix> Could not find platform dependent libraries Consider setting $PYTHONHOME to <prefix>[:] ImportError: No module named site CalledProcessError: Command '['./update_options.sh']' returned non-zero exit status 1: File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/SConstruct", line 172: main() File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/SConstruct", line 163: SConscript("SConscript", "build") File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py", line 614: return method(*args, **kw) File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py", line 551: return _SConscript(self.fs, *files, **subst_kw) File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/external/scons-local/scons-local-2.0.1/SCons/Script/SConscript.py", line 260: exec _file_ in call_stack[-1].globals File "/home/Xtal/Rosetta_phenix/rosetta_2014.35.57232_bundle/main/source/SConscript", line 28: subprocess.check_call(["./update_options.sh"]) File "/home/Xtal/Phenix/phenix-1.9-1692/build/intel-linux-2.6-x86_64/base/lib/python2.7/subprocess.py", line 540: raise CalledProcessError(retcode, cmd)

thanks in advance

Felipe _______________________________________________ phenixbb mailing list [email protected] mailto:[email protected] http://phenix-online.org/mailman/listinfo/phenixbb