Re: [phenixbb] AUTOSOL for MAD data with error message-'Need a symfile for solve'
I am also having this problem, has this been corrected? I am using
Cheers Peter Czabotar
Hi again Frank and Graeme and Mohan,
This is now fixed and should be available in tomorrow's build of
PHENIX. Most setting should now be available in Autosol (this bug only affected Autosol, not Autobuild or any other PHENIX routines).
Thanks for pointing out the problem (and Mohan if this does not solve
it in your case, please let me know and I'll continue to fix it).
All the best, Tom T
Hi Frank and Graeme and Mohan,
Yes, P 2 21 21 should be allowed in autosol. I see that it doesn't
work and I'll fix that.
All the best, Tom T
Um, this one has been hacked to death on ccp4bb: there is in fact
nothing wrong or "non-standard" with that setting. If the program won't
handle it, email the authors and ask them to fix it.
Reindexing is an almighty pain in the butt.
That said: it sounds like you may be pointing at an out-of-date symmetry operator file; I forget which environment variable it is, check the manual, but point it to an up-to-date ccp4 installation, and I suspect it will be fine.
phx
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Hi Peter, I am a little puzzled...I would have thought that it was fixed in phenix 1.6.1. Can you possibly send me your data and exact command so that I can fix this? I'm sorry about that! -Tom T phenix-1.6.1 through the phenix GUI. the addressee.
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Hi Tom, I have managed to solve the problem, as indicated by the error message there was no sym file present in; /phenix-1.6.1-357/solve_resolve/ext_ref_files To get around this I have just created the required sym file myself and placed it in the directory. I am surprised we have the problem though if it was fixed before phenix 1.6.1. Is there a source to download individual .sym files, I could not find any on the phenix website nor in a cursory google search. Cheers Peter
Hi Peter, I am a little puzzled...I would have thought that it was fixed in phenix 1.6.1. Can you possibly send me your data and exact command so that I can fix this? I'm sorry about that! -Tom T
I am also having this problem, has this been corrected? I am using phenix-1.6.1 through the phenix GUI.
Cheers Peter Czabotar
Hi again Frank and Graeme and Mohan,
This is now fixed and should be available in tomorrow's build of PHENIX. Most setting should now be available in Autosol (this bug only affected Autosol, not Autobuild or any other PHENIX routines).
Thanks for pointing out the problem (and Mohan if this does not solve it in your case, please let me know and I'll continue to fix it).
All the best, Tom T
Hi Frank and Graeme and Mohan,
Yes, P 2 21 21 should be allowed in autosol. I see that it doesn't work and I'll fix that.
All the best, Tom T
> Um, this one has been hacked to death on ccp4bb: there is in fact nothing wrong or "non-standard" with that setting. If the program won't > handle it, email the authors and ask them to fix it. > > Reindexing is an almighty pain in the butt. > > That said: it sounds like you may be pointing at an out-of-date symmetry operator file; I forget which environment variable it is, check the manual, but point it to an up-to-date ccp4 installation, and > I > suspect it will be fine. > > phx
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phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
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participants (2)
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Peter Czabotar -
Thomas C. Terwilliger