Is there a way to make "Find Difference peaks and holes" utility list the negative peaks as well? Just to give the user an idea of the noise levels of the map and to identify any aberrations. /mo On 3 April 2013 22:48, Nathaniel Echols wrote:

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I can't seem to find the "Find Difference peaks and holes" utility in

On Wed, Apr 3, 2013 at 2:43 PM, John Rose wrote: the PHENIX 1.8.2-1309 distribution. I found it to be very useful.

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Can you tell me where it is hiding.

It should be near the end of the list under the "Maps" category.

-Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

-- Morten K Grøftehauge, PhD Pohl Group Durham University

Correct (if you tell it to write the PDB file). "holes" = "negative peaks". -Nat On Fri, May 3, 2013 at 7:59 AM, Michel Fodje wrote:

Aren't those already listed as chain B in the output PDB file?

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-----Original Message----- From: [email protected] [mailto:phenixbb- [email protected]] On Behalf Of Morten Grøftehauge Sent: May-03-13 8:04 AM To: PHENIX user mailing list Subject: Re: [phenixbb] Find Difference peaks and holes

Is there a way to make "Find Difference peaks and holes" utility list the negative peaks as well? Just to give the user an idea of the noise levels of the map and to identify any aberrations.

/mo

On 3 April 2013 22:48, Nathaniel Echols wrote:

On Wed, Apr 3, 2013 at 2:43 PM, John Rose wrote: > I can't seem to find the "Find Difference peaks and holes" utility in the PHENIX 1.8.2-1309 distribution. I found it to be very useful. > > Can you tell me where it is hiding.

It should be near the end of the list under the "Maps" category.

-Nat

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-- Morten K Grøftehauge, PhD Pohl Group Durham University

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