GUI reorders file data type in EM validation task
![](https://secure.gravatar.com/avatar/1f17859a0458e4d1b7ae4f2bc10629db.jpg?s=120&d=mm&r=g)
Hi, I am having problems convincing the GUI which EM map is which for halfmap validation. Version is 1.17-3644 Here is input: [cid:[email protected]] and what is written to Summary tab: [cid:[email protected]] Any tricks to getting this to work? Editing the .eff file written by the gui is an option but running phenix.validation_cryoem on the command line doesn't seem to produce much viewable output. Cheers, Ashley -- Dr. Ashley Pike Membrane Protein Crystallography | Structural Genomics Consortium | University of Oxford Phone: +44 (0)1865 617576 | FAX: +44 (0)1865 617575 | [email protected]mailto:[email protected] | www.thesgc.orghttp://www.thesgc.org/ Address: Structural Genomics Consortium, Old Road Campus Research Building, Headington, Oxford OX3 7DQ, UK
![](https://secure.gravatar.com/avatar/056c5907370266db414e157458cef1c3.jpg?s=120&d=mm&r=g)
Hi Ashley,
Can you tell me which operating system and version you're using? Also, when
you add the files, do you add them all at once or one at a time? Thanks!
--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org
On Thu, Oct 24, 2019 at 3:23 AM Ashley Pike
Hi,
I am having problems convincing the GUI which EM map is which for halfmap validation. Version is 1.17-3644
Here is input:
and what is written to Summary tab:
Any tricks to getting this to work? Editing the .eff file written by the gui is an option but running phenix.validation_cryoem on the command line doesn’t seem to produce much viewable output.
Cheers,
Ashley
--
Dr. Ashley Pike
Membrane Protein Crystallography | Structural Genomics Consortium | University of Oxford
Phone: +44 (0)1865 617576 | FAX: +44 (0)1865 617575 | [email protected] | www.thesgc.org
Address: Structural Genomics Consortium, Old Road Campus Research Building, Headington, Oxford OX3 7DQ, UK
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]
![](https://secure.gravatar.com/avatar/1f17859a0458e4d1b7ae4f2bc10629db.jpg?s=120&d=mm&r=g)
Hi Billy,
When I add files - individually - the initial data type is automatically set to 'Real map' which I then alter depending on whether maps are full or half maps. Also when I modify the first datatype from Real -> full, the other two maps have their data type set to unknown - which I then change to half map.
Phenix version 1.17-3644
OS: Centos6.6 / 2.6.32-504.el6.x86_64
In contrast if I run phenix 1.16-3549 on a Centos7 system (3.10.0-1062.1.1.el7.x86_64), the gui behaviour for the validate task is different. The first map I add gets a datatype of 'Full map' and the two halfmaps are then assigned to 'Real map' which I then change to 'half map'. Running this job gives expected file assignments and behaviour.
HTH,
Ashley
From: Billy Poon
participants (2)
-
Ashley Pike
-
Billy Poon