Hi Philippe, Thank you for reporting the issue. Can you please send me (OFF list) the file you used as input so I can fix the issue? All files sent to me are treated as confidential. Best regards, Oleg Sobolev. On Fri, May 5, 2023 at 2:02 AM CUNIASSE Philippe wrote:

Dear all,

I tried to use the phenix.model_idealization code of phenix (in command line) following the syntax suggested in https://phenix-online.org/documentation/reference/model_idealization.html

phenix.model_idealization xxxx.pdb

But the code stops on the error :

Traceback (most recent call last):

File "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py", line 1118, in <module>

run(sys.argv[1:])

File "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py", line 1106, in run

mi_object.run()

File "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py", line 548, in run

self._setup_model_h()

File "/Applications/phenix-1.20.1-4487/build/../modules/cctbx_project/mmtbx/command_line/model_idealization.py", line 478, in _setup_model_h

params_h.pdb_interpretation = self.model._pdb_interpretation_params.pdb_interpretation

AttributeError: 'NoneType' object has no attribute 'pdb_interpretation'

Thanks in advance for any suggestion to solve this.

Best regards.

Philippe.

-----------------------------------------------

Philippe Cuniasse, PhD/HDR.

Institut de Biologie Integrative de la cellule.

UMR 9198 CNRS-CEA-Univ Paris Sud

Bat 144 CE-Saclay

91191 Gif-sur-Yvette Cedex

France

Tel: (33) 1 69 08 56 35

Fax: (33) 1 69 08 47 12

Email: [email protected]

Web: http://biodev.cea.fr/rasmot3d/

*[image: signature_3031510868]*[image: signature_394100311][image: signature_2972121752]

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