Hi Francis, Oh hmmm, I'm sorry! You are right. You need a nightly build for that option, as I put it in since the last official release. All the best, Tom T On Dec 11, 2013, at 11:03 AM, Francis Reyes wrote:

Hi Tom

Phenix 1.8.4-1496 doesn't have this option for phenix.find_ncs_from_density ?

Thnx, $ phenix.find_ncs_from_density find_ncs_from_density_params.eff ncs_mask_file=foo.mtz Parameters taken from: find_ncs_from_density_params.eff Sorry: Sorry, cannot interpret the keyword: ncs_mask_file=foo.mtz

F

On Dec 11, 2013, at 8:33 AM, Terwilliger, Thomas C wrote:

...

Hi Francis,

Try this:

phenix.find_ncs_from_density map_coeffs.mtz ncs_mask_file=ncs_mask.mtz

and look for ncs_mask.mtz

(dump_ncs_density instead dumps average density to temp_dir/ncs_avg_map_coeffs.mtz)

All the best, Tom T

On Dec 10, 2013, at 11:50 PM, Francis Reyes wrote:

...

I'd like to see the region of my maps that obey the NCS operators and I was hoping for separate mtz's for each region given I had set density_search.dump_ncs_density = True. However, I'm not getting any output mtzs. Any ideas?

Thanks, F

--------------------------------------------- Francis E. Reyes PhD 215 UCB University of Colorado at Boulder

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Hi Francis, No, unfortunately phenix.find_ncs_from_density doesn't know about multi-domain NCS... All the best, Tom T On Dec 11, 2013, at 3:29 PM, Francis Reyes wrote:

Thanks Tom,

Does phenix.find_ncs_from_density cope with multi-domain NCS?

F

On Dec 11, 2013, at 11:39 AM, Terwilliger, Thomas C wrote:

...

Hi Francis, Oh hmmm, I'm sorry! You are right. You need a nightly build for that option, as I put it in since the last official release. All the best, Tom T

On Dec 11, 2013, at 11:03 AM, Francis Reyes wrote:

...

Hi Tom

Phenix 1.8.4-1496 doesn't have this option for phenix.find_ncs_from_density ?

Thnx, $ phenix.find_ncs_from_density find_ncs_from_density_params.eff ncs_mask_file=foo.mtz Parameters taken from: find_ncs_from_density_params.eff Sorry: Sorry, cannot interpret the keyword: ncs_mask_file=foo.mtz

F

On Dec 11, 2013, at 8:33 AM, Terwilliger, Thomas C wrote:

...

Hi Francis,

Try this:

phenix.find_ncs_from_density map_coeffs.mtz ncs_mask_file=ncs_mask.mtz

and look for ncs_mask.mtz

(dump_ncs_density instead dumps average density to temp_dir/ncs_avg_map_coeffs.mtz)

All the best, Tom T

On Dec 10, 2013, at 11:50 PM, Francis Reyes wrote:

...

I'd like to see the region of my maps that obey the NCS operators and I was hoping for separate mtz's for each region given I had set density_search.dump_ncs_density = True. However, I'm not getting any output mtzs. Any ideas?

Thanks, F

--------------------------------------------- Francis E. Reyes PhD 215 UCB University of Colorado at Boulder

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

--------------------------------------------- Francis E. Reyes PhD 215 UCB University of Colorado at Boulder

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb