Dear Nat, Any progress in this matter. To add, do you have any version of Phenix which is working perfectly (the communication of Phenix with pymol and coot) in ubuntu system in you lab? Jobi On Tue, Nov 1, 2011 at 5:08 PM, Jobichen Chacko wrote:

Dear Nat, Just to add when I try open the files in pymol, it doesnot open up and show this output.

/usr/local/phenix-1.7.1-743/build/intel-linux-2.6-x86_64/base/bin/python2.7: No module named pymol

Jobi

On Tue, Nov 1, 2011 at 10:58 AM, Jobichen Chacko wrote:

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Dear Nat, I installed the the coot version you sent to me. Still not working. jobi

On Tue, Nov 1, 2011 at 10:43 AM, Nathaniel Echols wrote:

...

On Mon, Oct 31, 2011 at 7:34 PM, Jobichen Chacko wrote:

...

Dear Nat, Thank you for your help. Please see the attached output after running coot_test.py I will also try to install the coot version you send to me. Jobi ... 'import site' failed; use -v for traceback

Wow, that's way more broken than I was expecting.  I think this means a library conflict, but I've only come across this error on Mac.  Can you try one more thing?

export PYTHONVERBOSE=1 coot --script coot_test.py

(If you're using csh or tcsh as your shell, the first line should be "setenv PYTHONVERBOSE 1" instead.)

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