Thanks Nat, Seems I thought it was installed in /Applications when in fact it was in /usr/local Simon --------------------------------------------------------------- Dr Simon Kolstoe Laboratory for Protein Crystallography Centre for Amyloidosis & Acute Phase Proteins UCL Medical School Rowland Hill Street, London NW3 2PF Tel: 020 7433 2765 http://www.ucl.ac.uk/~rmhasek -------------------------------------------------------------- On 21 Apr 2011, at 19:06, Nathaniel Echols wrote:

On Thu, Apr 21, 2011 at 10:58 AM, Simon Kolstoe wrote:

...

I've just installed the latest stable version of phenix on a new macbook pro using phenix-installer-1.7-650-mac-intel-osx.tar

However, as I like running phenix.refine on the command line, I normally source the script phenix_env.sh which on my other computer is in the directory /Applications/PHENIX-1.7-650/Contents/phenix-1.7-650/

However the latest install doesn't seem to have the final phenix-1.7-650 directory! Has phenix_env.sh moved somewhere else and if so where?

There are three different Mac installer types currently in use:

- command-line installer (.tar) - disk image (version 1.7 only - I'm not making any more of these) - graphical installer (recent nightly builds, depending on platform and whether I remembered to create the package)

The command-line installer will always default to /usr/local/phenix-<version>. If run from a graphical login, it will also generate /Applications/PHENIX-<version> with an icon launcher, but no other files. The graphical installers install the entire distribution in /Applications, with most of it hidden in the "Contents" directory.

So if you're using the command-line version, you should do this:

source /usr/local/phenix-<version>/phenix_env.sh

and for the graphical installer:

source /Applications/PHENIX-<version>/Contents/phenix-<version>/phenix_env.sh

-Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb