Hi Everybody,
Is there a protocol for re-scaling several sets of diffraction data against
a common reference set, either native or based on a Fcalc set computed from
a common input model. The are from a number of derivatives, are all
isomorphus, and are anomalous data . We want to compare the relative peak
heights in Fo-Fc and Anom. difference maps
Cheers
Jens
+++++++++++++++++++++++++++++++++++++++++++++++++++
Jens J. Birktoft
e-mail: birktoft @ nyu.edu
phenix.xtriage will reindex data to a common reference set. scaling.input.xray_data.reference.data.file_name F On Apr 25, 2012, at 9:20 AM, jens j birktoft wrote:
Hi Everybody,
Is there a protocol for re-scaling several sets of diffraction data against a common reference set, either native or based on a Fcalc set computed from a common input model. The are from a number of derivatives, are all isomorphus, and are anomalous data . We want to compare the relative peak heights in Fo-Fc and Anom. difference maps
Cheers
Jens
+++++++++++++++++++++++++++++++++++++++++++++++++++ Jens J. Birktoft e-mail: birktoft @ nyu.edu ; Phone: 212-749-5057 +++++++++++++++++++++++++++++++++++++++++++++++++++ _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
scala (ccp4) has been able to do this for as long as I remember. On 25/04/2012 16:20, jens j birktoft wrote:
Hi Everybody,
Is there a protocol for re-scaling several sets of diffraction data against a common reference set, either native or based on a Fcalc set computed from a common input model. The are from a number of derivatives, are all isomorphus, and are anomalous data . We want to compare the relative peak heights in Fo-Fc and Anom. difference maps
Cheers
Jens
+++++++++++++++++++++++++++++++++++++++++++++++++++ Jens J. Birktoft e-mail: birktoft @ nyu.edu mailto:[email protected] ; Phone: 212-749-5057 tel:212-749-5057 +++++++++++++++++++++++++++++++++++++++++++++++++++
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
Hi Jens, Not exactly..but you can put in your native and a "derivative" in an MIR script and it will scale the derivative to your "native" and write out mir_fbar.mtz in the TEMP0/ directory (you can just stop the job as soon as it has done scaling). This will apply solve local scaling. All the best Tom T autosol { quick = True seq_file = seq.dat native { data = native.sca } deriv { data = pt.sca lambda = 1.4 atom_type = Pt } deriv { data = ki.sca lambda = 1.5 atom_type = I } } ________________________________ From: [email protected] [[email protected]] on behalf of jens j birktoft [[email protected]] Sent: Wednesday, April 25, 2012 9:20 AM To: PHENIX user mailing list Subject: Re: [phenixbb] Scaling of diffraction data Hi Everybody, Is there a protocol for re-scaling several sets of diffraction data against a common reference set, either native or based on a Fcalc set computed from a common input model. The are from a number of derivatives, are all isomorphus, and are anomalous data . We want to compare the relative peak heights in Fo-Fc and Anom. difference maps Cheers Jens +++++++++++++++++++++++++++++++++++++++++++++++++++ Jens J. Birktoft e-mail: birktoft @ nyu.edu mailto:[email protected] ; Phone: 212-749-5057tel:212-749-5057 +++++++++++++++++++++++++++++++++++++++++++++++++++
Hi Jens,
There's a beta version of a program called BLEND doing the rounds that'll
do euclidian hierarchy clustering for you and scale the data I believe.
That's what you want because you don't want to scale data that isn't
sufficiently isomorphous. Try asking on CCP4bb (sorry phenix). Two of the
talks at the CCP4 study weekend 2012 highlighted euclidian clustering (one
was Wayne Hendrickson and forget who the other one was... maybe it was the
XFEL talk?).
Med venlig hilsen
Morten
On 25 April 2012 21:27, Terwilliger, Thomas C
Hi Jens,
Not exactly..but you can put in your native and a "derivative" in an MIR script and it will scale the derivative to your "native" and write out mir_fbar.mtz in the TEMP0/ directory (you can just stop the job as soon as it has done scaling). This will apply solve local scaling.
All the best Tom T
autosol { quick = True seq_file = seq.dat native { data = native.sca } deriv { data = pt.sca lambda = 1.4 atom_type = Pt } deriv { data = ki.sca lambda = 1.5 atom_type = I } }
------------------------------ *From:* [email protected] [ [email protected]] on behalf of jens j birktoft [ [email protected]] *Sent:* Wednesday, April 25, 2012 9:20 AM *To:* PHENIX user mailing list *Subject:* Re: [phenixbb] Scaling of diffraction data
Hi Everybody,
Is there a protocol for re-scaling several sets of diffraction data against a common reference set, either native or based on a Fcalc set computed from a common input model. The are from a number of derivatives, are all isomorphus, and are anomalous data . We want to compare the relative peak heights in Fo-Fc and Anom. difference maps
Cheers
Jens
+++++++++++++++++++++++++++++++++++++++++++++++++++ Jens J. Birktoft e-mail: birktoft @ nyu.edu
; Phone: 212-749-5057 +++++++++++++++++++++++++++++++++++++++++++++++++++ _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
-- Morten K Grøftehauge, PhD Pohl Group Durham University
participants (5)
-
Francis E Reyes
-
Frank von Delft
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jens j birktoft
-
Morten Groftehauge
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Terwilliger, Thomas C