Dear Ivan, I'm sorry for the trouble! The problem is that the autobuild wizard writes the file overall_best_refine_map_coeffs.mtz for the purpose of generating map coefficients only. You only want to look at FP PHIM and FOMM from that file. The FC in that file is a dummy column (and yes, it is zero in this case. It is the FC from density modification in resolve, if density modification is carried out. I will remove this FC column in future versions as it is too confusing.) So if you want an FC for your model, the easiest way is to run phenix.pdbtools. See the write up at: http://www.phenix-online.org/documentation/pdbtools.htm which explains just how to generate FMODEL (which I am assuming is what you are looking for) including all the terms that you specify that you want to include. All the best, Tom T

Dear All,

I am trying to use Phenix AutoMR followed by Autobuild. The problem is that in the output file "overall_best_refine_map_coeffs.mtz" from Autobuild the Fc values have been set to zero. The Fc values are not zero in the output file MR.1.mtz coming from AutoMR if it may be of help. Any suggestion to fix this problem will be appreciated.

Thank you in advance

Ivan _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb