Ordered Solvent in phenix-1.3-rc2
I just installed the new version of of Phenix and I'm trying to use ordered solvent. I have a twinned, 3 A data set of about a 0.5 kDa protein, two in the asu. The job keeps dying during the ordered solvent, it says killed in the window the process was ran from. I think I might be running out of memory. I tried phenix refine without the ordered solvent and it didn't crash. How can I tell if it's a memory problem or a problem with the program? Thanks, Mary Mary X. Fitzgerald Postdoctoral Associate Arnold Lab
Hi Mary, Add --show-process-info to the phenix.refine command line to get information about memory usage. If it doesn't take to long for the crash to happen, monitoring the output of the "top" command is another way to find out how much memory is used. Ralf
participants (2)
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Mary Fitzgerald
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Ralf W. Grosse-Kunstleve