Hi Laurie, The problem is that mr_rosetta needed a pdb file name with more than 4 characters before the ".pdb" for this shortcut of generating pre-refined models to work (the Rosetta routine requires a longer file name). So if you rename your PDB file this should run (it does on my machine.) I will fix mr_rosetta so that it can take your PDB file. All the best, Tom T

...

On Tue, Oct 11, 2011 at 12:33 PM, Thomas C. Terwilliger < [email protected]> wrote:

...

Hi Laurie,

Yes, it is not doing anything. There is something that didn't work in the inputs. Can you send me your fasta and PDB files and I'll just run it here to see what is wrong?

Thanks! -Tom T

...

...

OK - I am also sending:

/netscr/bettsl/rosetta_test/MR_ROSETTA_2/GROUP_OF_PLACE_MODEL_1/RUN_1/REBUILD_IN_SETS_1/RUN_1/WORK_1/rebuild.log

...

On Tue, Oct 11, 2011 at 12:01 PM, Thomas C. Terwilliger < [email protected]> wrote:

...

Hi Laurie,

Yes, something didn't work it all right. Can you send me, off-list,

this

...

...

log file:

/netscr/bettsl/rosetta_test/MR_ROSETTA_1/GROUP_OF_PLACE_MODEL_1/RUN_1/REBUILD_IN_SETS_1/RUN_FILE_1.log

...

which I am guessing has some kind of error message in it.

Thanks! -Tom T

>> Hi - I tried the little prerefine without any data script in your >> documentation - I don't think it's working right. I attach the script >> file >> that I made (prerefine.dat) and the RUN_FILE_1.log. >> >> I can send more info offline if need be. >> >> Thanks >> >> LAurie Betts >> _______________________________________________ >> phenixbb mailing list >> [email protected] >> http://phenix-online.org/mailman/listinfo/phenixbb >>

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb