Re: [phenixbb] Forcing autobuild wizard to do a complete rebuild
Hi Carsten, You can tell the autobuild wizard from the command line: rebuild_in_place=False You can also set this in the GUI on the 2nd input screen at the top of the screen. I hope that helps! -Tom T At 10:17 AM 12/3/2007, you wrote:
Content-class: urn:content-classes:message Content-Type: multipart/alternative; boundary="----_=_NextPart_001_01C835D0.68A40BB9"
Hi,
I am using the autobuild wizard in the latest phenix release to rebuild a model from a MR solution. Since the MR-template I used has been modified with chainsaw, its sequence identity to the target sequence is fairly high. The autobuild wizard therefore uses the rebuilt-in-place mode to rebuild the model. How can I force the wizard to do a complete rebuild?
Thanks
Carsten _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545 Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
Thanks Tom, Peter As a follow-up question, which may have been addressed in the manual, but I don't recall seeing it: Does the (wizard) command line accept ALL keywords under the autobuild/autosol scope or ONLY the ones listed as "command-line-only"? I assumed (wrongfully?) that the command line only accepts the keywords explicitely listed under "command-line-only", and the rest is reserved for scripts/input files. I know, I could test this out, but a general clarification by the experts and an addition to the manual, if necessary, would be great. Cheers, Carsten
-----Original Message----- From: [email protected] [mailto:[email protected]]On Behalf Of Tom Terwilliger Sent: Monday, December 03, 2007 12:59 PM To: PHENIX user mailing list Subject: Re: [phenixbb] Forcing autobuild wizard to do a complete rebuild
Hi Carsten,
You can tell the autobuild wizard from the command line:
rebuild_in_place=False
You can also set this in the GUI on the 2nd input screen at the top of the screen.
I hope that helps! -Tom T
At 10:17 AM 12/3/2007, you wrote:
Content-class: urn:content-classes:message Content-Type: multipart/alternative; boundary="----_=_NextPart_001_01C835D0.68A40BB9"
Hi,
I am using the autobuild wizard in the latest phenix release to rebuild a model from a MR solution. Since the MR-template I used has been modified with chainsaw, its sequence identity to the target sequence is fairly high. The autobuild wizard therefore uses the rebuilt-in-place mode to rebuild the model. How can I force the wizard to do a complete rebuild?
Thanks
Carsten _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
Thomas C. Terwilliger Mail Stop M888 Los Alamos National Laboratory Los Alamos, NM 87545
Tel: 505-667-0072 email: [email protected] Fax: 505-665-3024 SOLVE web site: http://solve.lanl.gov PHENIX web site: http:www.phenix-online.org ISFI Integrated Center for Structure and Function Innovation web site: http://techcenter.mbi.ucla.edu TB Structural Genomics Consortium web site: http://www.doe-mbi.ucla.edu/TB
_______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
participants (2)
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Schubert, Carsten [PRDUS] -
Tom Terwilliger