Dear All For phenix.map_to_structure_factors, it needs to input the resolution d_min. But for an EM map, usually the resolution is the general resolution of the whole map (or to some extent the average resolution of the whole map). Is d_min for phenix.map_to_structure_factors the general EM map resolution, or the best resolution of the whole EM map, which is only for part of the EM map with the best quality? Smith
Hi, if you provide d_min it will define the radius of Ewald sphere for the purpose of structure factors calculation from the map. If you don't define d_min, it will do one of the two: try to guess it or compute all Fourier map coefficients in the box (don't remember which one of the two). Pavel On 6/12/15 02:02, Smith Liu wrote:
Dear All
For phenix.map_to_structure_factors, it needs to input the resolution d_min. But for an EM map, usually the resolution is the general resolution of the whole map (or to some extent the average resolution of the whole map). Is d_min for phenix.map_to_structure_factors the general EM map resolution, or the best resolution of the whole EM map, which is only for part of the EM map with the best quality?
Smith
participants (2)
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Pavel Afonine
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Smith Liu