sugar links in phenix.refine
Hi, How does phenix.refine handle the sugar links in refinement? I suppose phenix.refine will automatically recognize NAG and MAN. Will it recognized NAS-ASN, beta1-4, alpha1-4, etc linkages between sugars? Thanks. Jianghai +++++++++++++++++++++++++++++++ Jianghai Zhu, Ph.D CBR Institute for Biomedical Research Department of Pathology Harvard Medical School 200 Longwood Ave., Boston, MA 02115 Ph: 617-278-3211 Fx: 618-278-3232 +++++++++++++++++++++++++++++++
Will it recognized NAS-ASN, beta1-4, alpha1-4, etc linkages between sugars?
This is not automated (mainly out of fear of accidentally doing the wrong thing). You have to specify the linkages using the refinement.pdb_interpretation.apply_cif_link scope as explained here: http://www.phenix-online.org/download/cci_apps/ o phenix.refine [Documentation] Ralf
participants (2)
-
Jianghai Zhu
-
Ralf W. Grosse-Kunstleve