Hey all, I'm calling phenix.autobuild with the following command: phenix.autobuild data=second_try_33.1.mtz model=second_try_33.1.pdb \
seq_file=name_139_414.seq ps_in_rebuild=True
On my MacBook Pro (OSX 5.6, phenix Version: 1.4, Release tag: 3, cctbx
tag: 2008_12_07_1353, Platform: mac-intel-osx osx-10.5.6), I get the
following error:
Exception RuntimeError: 'maximum recursion depth exceeded while calling
a Python object' in
Hi Andreas, I'm sorry for the trouble! I have never seen this one or anything like it! If you would like to send to me ([email protected]) the data used I will try to see what is going on. If you don't have the latest phenix it would be good to try updating as well. All the best, Tom T
Hey all,
I'm calling phenix.autobuild with the following command:
phenix.autobuild data=second_try_33.1.mtz model=second_try_33.1.pdb \
seq_fileame_139_414.seq ps_in_rebuild=True
On my MacBook Pro (OSX 5.6, phenix Version: 1.4, Release tag: 3, cctbx tag: 2008_12_07_1353, Platform: mac-intel-osx osx-10.5.6), I get the following error:
Exception RuntimeError: 'maximum recursion depth exceeded while calling a Python object' in
ignored 108409888 On a linux box (RHEL 5.2, phenix Version: 1.4, Release tag: 3, cctbx tag: 2008_12_07_1353, Platform: intel-linux-2.6 redhat-e5.2) I get this error:
******************************************************************************** Failed to carry out AutoBuild_build_cycle:
child process stderr output: command: 'csh /csb/home/andreas/name/P6big/second_try/autobuild/AutoBuild_run_2_/TEMP0/RUN_FILE_1' tset: standard error: Invalid argument
********************************************************************************
Each time, the script was run on the same set of files residing on the linux box. I either ssh into the machine and run phenix.autobuild in an ssh shell or mount my linux home directory via MacFusion and run phenix.autobuild on the Mac.
I haven't tried copying the files to the Mac, but other phenix commands work with the remote data (e.g. phenix.autobuild data=data.mtz solvent_fraction=.6 ps_in_rebuild=True model=coords.pdb maps_only=True)
What's the problem?
Andreas
-- Andreas Förster, Research Associate Paul Freemont & Xiaodong Zhang Labs Department of Biochemistry, Imperial College London http://www.msf.bio.ic.ac.uk _______________________________________________ phenixbb mailing list [email protected] http://www.phenix-online.org/mailman/listinfo/phenixbb
participants (2)
-
Andreas Förster -
Thomas C. Terwilliger